FilooT: a visualization tool for exploring genomic data

نویسندگان

  • Mahshid Zeinaly
  • Mina Soltangheis
  • Chris D. Shaw
چکیده

In order to enhance analysis of synthetic health data of the IEEE VAST Challenge 2010, we introduce an interactive Visual Analytics tool called FilooT designed as a part of the Interactive Multi-genomic Analysis System (IMAS) project. In this paper, we described different interactive views of FilooT: Tabular View for exploring and comparing genetic sequences, Matrix View for sorting sequences according to the values of different characteristics, P-value View for finding the most important mutations across a family of sequences, Graph View for finding related sequences and Group View to group them for further investigation. We followed the Nested Process Model framework throughout the design process and the evaluation. To understand the tools design capabilities for target domain analysts, we conducted a User Experience scenario-based study followed by an informal interview. The findings indicated how analysts employ each of the visualization and interaction designs in their Bioinformatics task-analysis process. The critical analysis of the results inspired design informing suggestions.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

InVis: An Interactive Visualization Tool for Exploring Interaction Networks

We introduce InVis, a novel visualization technique and tool for exploring, navigating, and understanding user interaction data. InVis creates a interaction network from student-interaction data extracted from large numbers of students using educational systems, and enables instructors to make new insights and discoveries about student learning. Here we present our novel interaction network mod...

متن کامل

CisGenome Browser: a flexible tool for genomic data visualization

SUMMARY We present an open source, platform independent tool, called CisGenome Browser, which can work together with any other data analysis program to serve as a flexible component for genomic data visualization. It can also work by itself as a standalone genome browser. By working as a light-weight web server, CisGenome Browser is a convenient tool for data sharing between labs. It has featur...

متن کامل

Microreact: visualizing and sharing data for genomic epidemiology and phylogeography

Visualization is frequently used to aid our interpretation of complex datasets. Within microbial genomics, visualizing the relationships between multiple genomes as a tree provides a framework onto which associated data (geographical, temporal, phenotypic and epidemiological) are added to generate hypotheses and to explore the dynamics of the system under investigation. Selected static images a...

متن کامل

The EDM Vis Tool

We introduce EDM Vis, an information visualization software tool for exploring, navigating and understanding student data logs. EDM Vis loads student logs, entire classes, hundreds of students, at a time, and displays the student behavior of those students as they solved problems using a software tutor. The visualization uses a tree structure to provide an overview of class performance, and int...

متن کامل

PBrowse: a web-based platform for real-time collaborative exploration of genomic data

Genome browsers are widely used for individually exploring various types of genomic data. A handful of genome browsers offer limited tools for collaboration among multiple users. Here, we describe PBrowse, an integrated real-time collaborative genome browser that enables multiple users to simultaneously view and access genomic data, thereby harnessing the wisdom of the crowd. PBrowse is based o...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2014